Szczegóły publikacji
Opis bibliograficzny
Improving quality control of whole slide images by explicit artifact augmentation / Artur JURGAS, Marek WODZIŃSKI, Marina D’Amato, Jeroen van der Laak, Manfredo Atzori, Henning Müller // Scientific Reports [Dokument elektroniczny]. — Czasopismo elektroniczne ; ISSN 2045-2322. — 2024 — vol. 14 art. no. 17847, s. 1-12. — Wymagania systemowe: Adobe Reader. — Bibliogr. s. 10-11, Abstr. — Publikacja dostępna online od: 2024-08-01. — A. Jurgas, M. Wodziński - dod. afiliacja: University of Applied Sciences Western Switzerland (HES-SO), Institute of Informatics
Autorzy (6)
- AGHJurgas Artur
- AGHWodziński Marek
- D'Amato Marina
- van der Laak Jeroen
- Atzori Manfredo
- Müller Henning
Słowa kluczowe
Dane bibliometryczne
| ID BaDAP | 155068 |
|---|---|
| Data dodania do BaDAP | 2024-09-23 |
| Tekst źródłowy | URL |
| DOI | 10.1038/s41598-024-68667-2 |
| Rok publikacji | 2024 |
| Typ publikacji | artykuł w czasopiśmie |
| Otwarty dostęp |  |
| Creative Commons | |
| Czasopismo/seria | Scientific Reports |
Abstract
The problem of artifacts in whole slide image acquisition, prevalent in both clinical workflows and research-oriented settings, necessitates human intervention and re-scanning. Overcoming this challenge requires developing quality control algorithms, that are hindered by the limited availability of relevant annotated data in histopathology. The manual annotation of ground-truth for artifact detection methods is expensive and time-consuming. This work addresses the issue by proposing a method dedicated to augmenting whole slide images with artifacts. The tool seamlessly generates and blends artifacts from an external library to a given histopathology dataset. The augmented datasets are then utilized to train artifact classification methods. The evaluation shows their usefulness in classification of the artifacts, where they show an improvement from 0.10 to 0.01 AUROC depending on the artifact type. The framework, model, weights, and ground-truth annotations are freely released to facilitate open science and reproducible research.
